4I8T C.Esp1396I bound to a 19 base pair DNA duplex date 2012-12-04
authors Martin, R.N.A., McGeehan, J.E., Kneale, G.G.
compound source
symmetry
R_factor
R_Free 0.2934
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural analysis of DNA-protein complexes regulating the restriction-modification system Esp1396I., Martin RN, McGeehan JE, Ball NJ, Streeter SD, Thresh SJ, Kneale GG, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Sep;69(Pt 9):962-6. doi:, 10.1107/S174430911302126X. Epub 2013 Aug 19. PMID:23989141
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (4i8t.pdb1.gz) 42 Kb
  • CSU: Contacts of Structural Units for 4I8T
  • Structure Factors (107 Kb)
  • Retrieve 4I8T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4I8T from S2C, [Save to disk]
  • Re-refined 4i8t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4I8T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4I8T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4I8T, from MSDmotif at EBI
  • Fold representative 4i8t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4i8t_A] [4i8t_B] [4i8t_D] [4i8t_C] [4i8t]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4I8T: [HTH_XRE ] by SMART
  • Other resources with information on 4I8T
  • Community annotation for 4I8T at PDBWiki (http://pdbwiki.org)

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