4I9Q	Crystal structure of the ternary complex of the D714A mutant of RB69 DNA polymerase	date	2012-12-05
authors	Guja, K.E., Jacewicz, A., Trzemecka, A., Plochocka, D., Yakubovskaya, E., Bebenek, A., Garcia-Diaz, M.
compound		source
symmetry		R_factor R_Free 0.2871
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.30
ligand	CA, NA, XG4	enzyme
Gene Ontology	Chain Function Process Component A, B DNA-directed DNA polymerase ... nuclease activity exonuclease activity 3'-5' exonuclease activity
Primary reference	A Remote Palm Domain Residue of RB69 DNA Polymerase Is Critical for Enzyme Activity and Influences the Conformation of the Active Site., Jacewicz A, Trzemecka A, Guja KE, Plochocka D, Yakubovskaya E, Bebenek A, Garcia-Diaz M, PLoS One. 2013 Oct 7;8(10):e76700. doi: 10.1371/journal.pone.0076700. PMID:24116139

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (641 Kb) [Save to disk] Biological Unit Coordinates (4i9q.pdb1.gz) 316 Kb Biological Unit Coordinates (4i9q.pdb2.gz) 321 Kb LPC: Ligand-Protein Contacts for 4I9Q CSU: Contacts of Structural Units for 4I9Q Structure Factors (955 Kb) Retrieve 4I9Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4I9Q from S2C, [Save to disk] Re-refined 4i9q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4I9Q in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4I9Q

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4I9Q, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4i9q_D] [4i9q_T] [4i9q_P] [4i9q] [4i9q_C] [4i9q_A] [4i9q_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4I9Q: [POLBc ] by SMART

Other resources with information on 4I9Q

Community annotation for 4I9Q at PDBWiki (http://pdbwiki.org)

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