4IC7 Crystal structure of the ERK5 kinase domain in complex with an MKK5 binding fragment date 2012-12-10
authors Gogl, G., Remenyi, A.
compound source
symmetry
R_factor
R_Free 0.2580
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand ANP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D


Primary referenceStructural mechanism for the specific assembly and activation of the extracellular signal regulated kinase 5 (ERK5) module., Glatz G, Gogl G, Alexa A, Remenyi A, J Biol Chem. 2013 Mar 22;288(12):8596-609. doi: 10.1074/jbc.M113.452235. Epub, 2013 Feb 4. PMID:23382384
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (315 Kb) [Save to disk]
  • Biological Unit Coordinates (4ic7.pdb1.gz) 159 Kb
  • Biological Unit Coordinates (4ic7.pdb2.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 4IC7
  • CSU: Contacts of Structural Units for 4IC7
  • Structure Factors (652 Kb)
  • Retrieve 4IC7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IC7 from S2C, [Save to disk]
  • Re-refined 4ic7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4IC7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4IC7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IC7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ic7] [4ic7_B] [4ic7_E] [4ic7_A] [4ic7_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4IC7: [PB1] [S_TKc ] by SMART
  • Other resources with information on 4IC7
  • Community annotation for 4IC7 at PDBWiki (http://pdbwiki.org)

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