4IDP human atlastin-1 1-446, N440T, GppNHp date 2012-12-12
authors Byrnes, L.J., Singh, A., Szeto, K., Benvin, N.M., Donnell, J.P.O., Zipfel, W.R., Sondermann, H.
compound source
symmetry
R_factor
R_Free 0.2360
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.59
ligand GNP, MG, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis for conformational switching and GTP loading of the large G protein atlastin., Byrnes LJ, Singh A, Szeto K, Benvin NM, O'Donnell JP, Zipfel WR, Sondermann H, EMBO J. 2013 Jan 18. doi: 10.1038/emboj.2012.353. PMID:23334294
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (554 Kb) [Save to disk]
  • Biological Unit Coordinates (4idp.pdb1.gz) 276 Kb
  • Biological Unit Coordinates (4idp.pdb2.gz) 273 Kb
  • LPC: Ligand-Protein Contacts for 4IDP
  • CSU: Contacts of Structural Units for 4IDP
  • Structure Factors (619 Kb)
  • Retrieve 4IDP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IDP from S2C, [Save to disk]
  • Re-refined 4idp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IDP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IDP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IDP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4idp_D] [4idp] [4idp_A] [4idp_B] [4idp_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4IDP
  • Community annotation for 4IDP at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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