OCA Atlas for 4IEF

4IEF

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BA, CA, CL, CSD, GOL, MG, NA, TRS

enzyme

Gene

Gene
Ontology

Chain	Function	Process	Component
F, D, H, B
G, A, C, E

Primary reference

Porphyromonas gingivalis Virulence Factor Gingipain RgpB Shows a Unique Zymogenic Mechanism for Cysteine Peptidases., de Diego I, Veillard FT, Guevara T, Potempa B, Sztukowska M, Potempa J, Gomis-Ruth FX, J Biol Chem. 2013 May 17;288(20):14287-96. doi: 10.1074/jbc.M112.444927. Epub, 2013 Apr 4. PMID:23558682

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (805 Kb) [Save to disk]

Biological Unit Coordinates (4ief.pdb1.gz) 204 Kb

Biological Unit Coordinates (4ief.pdb2.gz) 205 Kb

Biological Unit Coordinates (4ief.pdb3.gz) 206 Kb

Biological Unit Coordinates (4ief.pdb4.gz) 204 Kb

LPC: Ligand-Protein Contacts for 4IEF

CSU: Contacts of Structural Units for 4IEF

Structure Factors (2084 Kb)

Retrieve 4IEF in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4IEF from S2C, [Save to disk]

Re-refined 4ief structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4IEF in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ief] [4ief_A] [4ief_B] [4ief_C] [4ief_D] [4ief_E] [4ief_F] [4ief_G] [4ief_H]

SWISS-PROT database:

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