OCA Atlas for 4IF4

4IF4

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BEF, MG, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, C, A, D

Primary reference

Phosphorylation-dependent conformational changes and domain rearrangements in Staphylococcus aureus VraR activation., Leonard PG, Golemi-Kotra D, Stock AM, Proc Natl Acad Sci U S A. 2013 May 21;110(21):8525-30. doi:, 10.1073/pnas.1302819110. Epub 2013 May 6. PMID:23650349

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (212 Kb) [Save to disk]

Biological Unit Coordinates (4if4.pdb1.gz) 205 Kb

Biological Unit Coordinates (4if4.pdb2.gz) 104 Kb

Biological Unit Coordinates (4if4.pdb3.gz) 104 Kb

LPC: Ligand-Protein Contacts for 4IF4

CSU: Contacts of Structural Units for 4IF4

Structure Factors (664 Kb)

Retrieve 4IF4 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4IF4 from S2C, [Save to disk]

Re-refined 4if4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4IF4 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4if4] [4if4_A] [4if4_B] [4if4_C] [4if4_D]

SWISS-PROT database:

Domains found in 4IF4: [HTH_LUXR] [REC ] by SMART

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