4IG1 Crystal structure of Treponema pallidum TP0796 Flavin trafficking protein, Mg(II)-AMP product bound form date
authors Tomchick, D.R., Brautigam, C.A., Deka, R.K., Norgard, M.V.
compound source
symmetry
R_factor
R_Free 0.2107
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.43
ligand ACT, AMP, MG enzyme
Gene TP
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe TP0796 lipoprotein of Treponema pallidum is a bimetal-dependent FAD pyrophosphatase with a potential role in flavin homeostasis., Deka RK, Brautigam CA, Liu WZ, Tomchick DR, Norgard MV, J Biol Chem. 2013 Feb 27. PMID:23447540
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (4ig1.pdb1.gz) 160 Kb
  • LPC: Ligand-Protein Contacts for 4IG1
  • CSU: Contacts of Structural Units for 4IG1
  • Structure Factors (732 Kb)
  • Retrieve 4IG1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IG1 from S2C, [Save to disk]
  • Re-refined 4ig1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IG1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IG1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IG1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ig1_A] [4ig1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4IG1
  • Community annotation for 4IG1 at PDBWiki (http://pdbwiki.org)

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