4IO0 Crystal structure of F128A mutant of an epoxide hydrolase from Bacillus megaterium complexed with its product (R)-3-[1]naphthyloxy-propane-1,2-diol date
authors Kong, X.D., Zhou, J.H., Xu, J.H.
compound source
symmetry
R_factor
R_Free 0.2316
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand RN1, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceEngineering of an epoxide hydrolase for efficient bioresolution of bulky pharmaco substrates., Kong XD, Yuan S, Li L, Chen S, Xu JH, Zhou J, Proc Natl Acad Sci U S A. 2014 Nov 4;111(44):15717-22. doi:, 10.1073/pnas.1404915111. Epub 2014 Oct 20. PMID:25331869
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (4io0.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (4io0.pdb2.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 4IO0
  • CSU: Contacts of Structural Units for 4IO0
  • Structure Factors (370 Kb)
  • Retrieve 4IO0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IO0 from S2C, [Save to disk]
  • Re-refined 4io0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IO0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IO0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IO0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4io0_A] [4io0] [4io0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4IO0
  • Community annotation for 4IO0 at PDBWiki (http://pdbwiki.org)

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