4IOA	Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans	date
authors	Han, S., Marr, E.S.
compound		source
symmetry		R_factor R_Free 0.2296
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.20
ligand	1F3, MG	enzyme
Gene Ontology	Chain Function Process Component 1 2 3 4 A B C D E F G H I J K L M N O P Q R S T U V W Z
Primary reference	Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates., Magee TV, Han S, McCurdy SP, Nguyen TT, Granskog K, Marr ES, Maguire BA, Huband MD, Chen JM, Subashi TA, Shanmugasundaram V, Bioorg Med Chem Lett. 2013 Mar 15;23(6):1727-31. doi: 10.1016/j.bmcl.2013.01.067., Epub 2013 Jan 26. PMID:23414806

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1663 Kb) [Save to disk] Biological Unit Coordinates (4ioa.pdb1.gz) 1651 Kb LPC: Ligand-Protein Contacts for 4IOA CSU: Contacts of Structural Units for 4IOA Structure Factors (4886 Kb) Retrieve 4IOA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4IOA from S2C, [Save to disk] Re-refined 4ioa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4IOA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4IOA

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4IOA, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ioa_O] [4ioa_4] [4ioa_K] [4ioa_R] [4ioa_F] [4ioa_V] [4ioa_P] [4ioa_A] [4ioa_J] [4ioa_2] [4ioa_Z] [4ioa_1] [4ioa_M] [4ioa_N] [4ioa_X] [4ioa_W] [4ioa_C] [4ioa_U] [4ioa_I] [4ioa_3] [4ioa_L] [4ioa_S] [4ioa_Y] [4ioa] [4ioa_E] [4ioa_G] [4ioa_Q] [4ioa_D] [4ioa_B] [4ioa_T] [4ioa_H] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4IOA: [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART

Other resources with information on 4IOA

Community annotation for 4IOA at PDBWiki (http://pdbwiki.org)

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