4IS6 Crystal structure of HLA-DR4 bound to GP100 peptide date 2013-01-16
authors Li, Y.
compound source
symmetry
R_factor
R_Free 0.2980
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructure-Based Design of Altered MHC Class II-Restricted Peptide Ligands with Heterogeneous Immunogenicity., Chen S, Li Y, Depontieu FR, McMiller TL, English AM, Shabanowitz J, Kos F, Sidney J, Sette A, Rosenberg SA, Hunt DF, Mariuzza RA, Topalian SL, J Immunol. 2013 Oct 9. PMID:24108701
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (4is6.pdb1.gz) 64 Kb
  • CSU: Contacts of Structural Units for 4IS6
  • Structure Factors (126 Kb)
  • Retrieve 4IS6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4IS6 from S2C, [Save to disk]
  • Re-refined 4is6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4IS6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4IS6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4IS6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4is6_A] [4is6_C] [4is6] [4is6_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4IS6: [IGc1] [MHC_II_alpha] [MHC_II_beta ] by SMART
    • Other resources with information on 4IS6
  • Community annotation for 4IS6 at PDBWiki (http://pdbwiki.org)

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