4J25 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand MN, OGA enzyme
Gene PP
Gene
Ontology
ChainFunctionProcessComponent
E, H, G, F, B, A, D, C


Primary referenceHuman oxygen sensing may have origins in prokaryotic elongation factor Tu prolyl-hydroxylation., Scotti JS, Leung IK, Ge W, Bentley MA, Paps J, Kramer HB, Lee J, Aik W, Choi H, Paulsen SM, Bowman LA, Loik ND, Horita S, Ho CH, Kershaw NJ, Tang CM, Claridge TD, Preston GM, McDonough MA, Schofield CJ, Proc Natl Acad Sci U S A. 2014 Sep 16;111(37):13331-6. doi:, 10.1073/pnas.1409916111. Epub 2014 Sep 2. PMID:25197067
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (481 Kb) [Save to disk]
  • Biological Unit Coordinates (4j25.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (4j25.pdb2.gz) 62 Kb
  • Biological Unit Coordinates (4j25.pdb3.gz) 61 Kb
  • Biological Unit Coordinates (4j25.pdb4.gz) 63 Kb
  • Biological Unit Coordinates (4j25.pdb5.gz) 63 Kb
  • Biological Unit Coordinates (4j25.pdb6.gz) 62 Kb
  • Biological Unit Coordinates (4j25.pdb7.gz) 61 Kb
  • Biological Unit Coordinates (4j25.pdb8.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 4J25
  • CSU: Contacts of Structural Units for 4J25
  • Structure Factors (1212 Kb)
  • Retrieve 4J25 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J25 from S2C, [Save to disk]
  • Re-refined 4j25 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4J25 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j25] [4j25_A] [4j25_B] [4j25_C] [4j25_D] [4j25_E] [4j25_F] [4j25_G] [4j25_H]
  • SWISS-PROT database:
  • Domain found in 4J25: [P4Hc ] by SMART

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