4J2I Multiple crystal structures of an all-AT DNA dodecamer stabilized by weak interactions date
authors Acosta-Reyes, F.J., Subirana, J.A., Pous, J., Sanchez, R., Condom, N., Baldini, R., Malinina, L., Campos, J.L.
compound source
R_Free 0.28729
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.98
Primary referencePolymorphic crystal structures of an all-AT DNA dodecamer., Acosta-Reyes FJ, Subirana JA, Pous J, Sanchez-Giraldo R, Condom N, Baldini R, Malinina L, Campos JL, Biopolymers. 2015 Mar;103(3):123-33. doi: 10.1002/bip.22565. PMID:25257185
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (4j2i.pdb1.gz) 10 Kb
  • Biological Unit Coordinates (4j2i.pdb2.gz) 10 Kb
  • Biological Unit Coordinates (4j2i.pdb3.gz) 10 Kb
  • Biological Unit Coordinates (4j2i.pdb4.gz) 10 Kb
  • CSU: Contacts of Structural Units for 4J2I
  • Structure Factors (147 Kb)
  • Retrieve 4J2I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J2I from S2C, [Save to disk]
  • Re-refined 4j2i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4J2I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4J2I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J2I, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j2i_E] [4j2i_H] [4j2i_A] [4j2i_F] [4j2i_D] [4j2i_B] [4j2i_C] [4j2i] [4j2i_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4J2I
  • Community annotation for 4J2I at PDBWiki (http://pdbwiki.org)

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