4J4D Structure of P51G Cyanovirin-N swapped dimer in the P21212 space group date
authors Koharudin, L.M.I., Liu, L., Gronenborn, A.M.
compound source
symmetry
R_factor
R_Free 0.26582
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDifferent 3D domain-swapped oligomeric cyanovirin-N structures suggest trapped folding intermediates., Koharudin LM, Liu L, Gronenborn AM, Proc Natl Acad Sci U S A. 2013 Apr 22. PMID:23610431
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (4j4d.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (4j4d.pdb2.gz) 34 Kb
  • CSU: Contacts of Structural Units for 4J4D
  • Structure Factors (340 Kb)
  • Retrieve 4J4D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J4D from S2C, [Save to disk]
  • Re-refined 4j4d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4J4D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4J4D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J4D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j4d_D] [4j4d_A] [4j4d] [4j4d_B] [4j4d_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4J4D: [CVNH ] by SMART
    • Other resources with information on 4J4D
  • Community annotation for 4J4D at PDBWiki (http://pdbwiki.org)

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