OCA Atlas for 4J5R

4J5R

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

A1R, CL, EDO

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, A

Primary reference

Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease., Sharifi R, Morra R, Denise Appel C, Tallis M, Chioza B, Jankevicius G, Simpson MA, Matic I, Ozkan E, Golia B, Schellenberg MJ, Weston R, Williams JG, Rossi MN, Galehdari H, Krahn J, Wan A, Trembath RC, Crosby AH, Ahel D, Hay R, Ladurner AG, Timinszky G, Williams RS, Ahel I, EMBO J. 2013 Mar 12. doi: 10.1038/emboj.2013.51. PMID:23481255

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk]

Biological Unit Coordinates (4j5r.pdb1.gz) 120 Kb

Biological Unit Coordinates (4j5r.pdb2.gz) 118 Kb

Biological Unit Coordinates (4j5r.pdb3.gz) 236 Kb

LPC: Ligand-Protein Contacts for 4J5R

CSU: Contacts of Structural Units for 4J5R

Structure Factors (2080 Kb)

Retrieve 4J5R in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4J5R from S2C, [Save to disk]

Re-refined 4j5r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4J5R in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4j5r] [4j5r_A] [4j5r_B]

SWISS-PROT database:

Domain found in 4J5R: [A1pp ] by SMART

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