4J6R Crystal structure of broadly and potently neutralizing antibody VRC23 in complex with HIV-1 gp120 date
authors Zhou, T., Moquin, S., Kwong, P.D.
compound source
symmetry
R_factor
R_Free 0.1976
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.64
ligand BU3, CA, EDO, MPD, NAG, PCA, TRS enzyme
Gene
Ontology
ChainFunctionProcessComponent
G


Primary referenceDelineating antibody recognition in polyclonal sera from patterns of HIV-1 isolate neutralization., Georgiev IS, Doria-Rose NA, Zhou T, Kwon YD, Staupe RP, Moquin S, Chuang GY, Louder MK, Schmidt SD, Altae-Tran HR, Bailer RT, McKee K, Nason M, O'Dell S, Ofek G, Pancera M, Srivatsan S, Shapiro L, Connors M, Migueles SA, Morris L, Nishimura Y, Martin MA, Mascola JR, Kwong PD, Science. 2013 May 10;340(6133):751-6. doi: 10.1126/science.1233989. PMID:23661761
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (398 Kb) [Save to disk]
  • Biological Unit Coordinates (4j6r.pdb1.gz) 388 Kb
  • LPC: Ligand-Protein Contacts for 4J6R
  • CSU: Contacts of Structural Units for 4J6R
  • Structure Factors (1580 Kb)
  • Retrieve 4J6R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J6R from S2C, [Save to disk]
  • Re-refined 4j6r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4J6R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4J6R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4J6R, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j6r_G] [4j6r] [4j6r_H] [4j6r_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4J6R: [IG_like] [IGv ] by SMART
    • Other resources with information on 4J6R
  • Community annotation for 4J6R at PDBWiki (http://pdbwiki.org)

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