4J8V X-ray structure of NCP145 with bound chlorido(eta-6-p-cymene)(N-phenyl-2-pyridinecarbothioamide)ruthenium(II) date
authors Adhireksan, Z., Davey, C.A.
compound source
symmetry
R_factor
R_Free 0.27342
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.58
ligand MG, RU7, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (4j8v.pdb1.gz) 121 Kb
  • Biological Unit Coordinates (4j8v.pdb2.gz) 122 Kb
  • Biological Unit Coordinates (4j8v.pdb3.gz) 240 Kb
  • LPC: Ligand-Protein Contacts for 4J8V
  • CSU: Contacts of Structural Units for 4J8V
  • Structure Factors (935 Kb)
  • Retrieve 4J8V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4J8V from S2C, [Save to disk]
  • Re-refined 4j8v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4J8V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4J8V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4J8V, from MSDmotif at EBI
  • Fold representative 4j8v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4j8v] [4j8v_B] [4j8v_J] [4j8v_C] [4j8v_E] [4j8v_A] [4j8v_I] [4j8v_G] [4j8v_D] [4j8v_F] [4j8v_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4J8V: [H2A] [H2B] [H3] [H4 ] by SMART
  • Other resources with information on 4J8V
  • Community annotation for 4J8V at PDBWiki (http://pdbwiki.org)

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