4JBV Calcium-Dependent Protein Kinase 1 from Toxoplasma gondii (TgCDPK1) in complex with inhibitor UW1268 date 2013-02-20
authors Merritt, E.A., Larson, E.T.
compound source
symmetry
R_factor
R_Free 0.2389
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand V68 enzyme
Gene TGGT1 ; TGVEG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDevelopment of potent and selective Plasmodium falciparum calcium-dependent protein kinase 4 (PfCDPK4) inhibitors that block the transmission of malaria to mosquitoes., Vidadala RS, Ojo KK, Johnson SM, Zhang Z, Leonard SE, Mitra A, Choi R, Reid MC, Keyloun KR, Fox AM, Kennedy M, Silver-Brace T, Hume JC, Kappe S, Verlinde CL, Fan E, Merritt EA, Van Voorhis WC, Maly DJ, Eur J Med Chem. 2014 Mar 3;74:562-73. doi: 10.1016/j.ejmech.2013.12.048. Epub, 2014 Jan 11. PMID:24531197
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (4jbv.pdb1.gz) 153 Kb
  • LPC: Ligand-Protein Contacts for 4JBV
  • CSU: Contacts of Structural Units for 4JBV
  • Structure Factors (1003 Kb)
  • Retrieve 4JBV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JBV from S2C, [Save to disk]
  • Re-refined 4jbv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JBV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JBV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JBV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jbv] [4jbv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4JBV: [EFh] [S_TKc ] by SMART
    • Other resources with information on 4JBV
  • Community annotation for 4JBV at PDBWiki (http://pdbwiki.org)

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