4JDT date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
G


Primary referenceStructural basis for HIV-1 gp120 recognition by a germ-line version of a broadly neutralizing antibody., Scharf L, West AP Jr, Gao H, Lee T, Scheid JF, Nussenzweig MC, Bjorkman PJ, Diskin R, Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):6049-54. doi:, 10.1073/pnas.1303682110. Epub 2013 Mar 22. PMID:23524883
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (259 Kb) [Save to disk]
  • Biological Unit Coordinates (4jdt.pdb1.gz) 252 Kb
  • LPC: Ligand-Protein Contacts for 4JDT
  • CSU: Contacts of Structural Units for 4JDT
  • Structure Factors (127 Kb)
  • Retrieve 4JDT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JDT from S2C, [Save to disk]
  • Re-refined 4jdt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JDT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jdt] [4jdt_G] [4jdt_H] [4jdt_L]
  • SWISS-PROT database:
  • Domains found in 4JDT: [IG_like] [IGv ] by SMART

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science