4JFN Crystal structure of the N-terminal, growth factor-like domain of the amyloid precursor protein bound to copper date
authors Wild, K., Baumkotter, F., Kins, S.
compound source
symmetry
R_factor
R_Free 0.2303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.75
ligand CU, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAmyloid precursor protein dimerization and synaptogenic function depend on copper binding to the growth factor-like domain., Baumkotter F, Schmidt N, Vargas C, Schilling S, Weber R, Wagner K, Fiedler S, Klug W, Radzimanowski J, Nickolaus S, Keller S, Eggert S, Wild K, Kins S, J Neurosci. 2014 Aug 13;34(33):11159-72. doi: 10.1523/JNEUROSCI.0180-14.2014. PMID:25122912
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (4jfn.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 4JFN
  • CSU: Contacts of Structural Units for 4JFN
  • Structure Factors (176 Kb)
  • Retrieve 4JFN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JFN from S2C, [Save to disk]
  • Re-refined 4jfn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JFN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JFN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JFN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jfn_A] [4jfn]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JFN: [A4_EXTRA ] by SMART
    • Other resources with information on 4JFN
  • Community annotation for 4JFN at PDBWiki (http://pdbwiki.org)

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