4JFQ A2 HLA complex with L8A heteroclitic variant of Melanoma peptide date 2013-02-28
authors Rizkallah, P.J., Cole, D.K., Madura, F., Sewell, A.K., Baker, B.M.
compound source
symmetry
R_factor
R_Free 0.2966
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand GOL, MES enzyme
Gene
Ontology
ChainFunctionProcessComponent
E, B
  • cellular response to iron io...

  • Primary referenceT-cell receptor specificity maintained by altered thermodynamics., Madura F, Rizkallah PJ, Miles KM, Holland CJ, Bulek AM, Fuller A, Schauenburg AJ, Miles JJ, Liddy N, Sami M, Li Y, Hossain M, Baker BM, Jakobsen BK, Sewell AK, Cole DK, J Biol Chem. 2013 May 22. PMID:23698002
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (288 Kb) [Save to disk]
  • Biological Unit Coordinates (4jfq.pdb1.gz) 142 Kb
  • Biological Unit Coordinates (4jfq.pdb2.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 4JFQ
  • CSU: Contacts of Structural Units for 4JFQ
  • Structure Factors (500 Kb)
  • Retrieve 4JFQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JFQ from S2C, [Save to disk]
  • Re-refined 4jfq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JFQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JFQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JFQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jfq_B] [4jfq_C] [4jfq_D] [4jfq] [4jfq_A] [4jfq_E] [4jfq_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JFQ: [IGc1 ] by SMART
  • Other resources with information on 4JFQ
  • Community annotation for 4JFQ at PDBWiki (http://pdbwiki.org)

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