OCA Atlas for 4JI3

4JI3

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

2MG, 4OC, 5MC, 7MG, M2G, MA6, MG, PSU, SRY, UR3, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U

Primary reference

The central role of protein S12 in organizing the structure of the decoding site of the ribosome., Demirci H, Wang L, Murphy FV 4th, Murphy EL, Carr JF, Blanchard SC, Jogl G, Dahlberg AE, Gregory ST, RNA. 2013 Oct 23. PMID:24152548

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2227 Kb) [Save to disk]

Biological Unit Coordinates (4ji3.pdb1.gz) 2190 Kb

LPC: Ligand-Protein Contacts for 4JI3

CSU: Contacts of Structural Units for 4JI3

Structure Factors (2490 Kb)

Retrieve 4JI3 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4JI3 from S2C, [Save to disk]

Re-refined 4ji3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4JI3 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ji3] [4ji3_A] [4ji3_B] [4ji3_C] [4ji3_D] [4ji3_E] [4ji3_F] [4ji3_G] [4ji3_H] [4ji3_I] [4ji3_J] [4ji3_K] [4ji3_L] [4ji3_M] [4ji3_N] [4ji3_O] [4ji3_P] [4ji3_Q] [4ji3_R] [4ji3_S] [4ji3_T] [4ji3_U]

SWISS-PROT database:

Domains found in 4JI3: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

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