4JKS Crystal structure of probable sugar kinase protein from Rhizobium etli CFN 42 complexed with DMSO, NYSGRC Target 14306 date 2013-03-11
authors Malashkevich, V.N., Bhosle, R., Toro, R., Hillerich, B., Gizzi, A., Garforth, S., Kar, A., Chan, M.K., Lafluer, J., Patel, H., Matikainen, B., Chamala, S., Lim, S., Celikgil, A., Villegas, G., Evans, B., Love, J., Fiser, A., Khafizov, K., Seidel, R., Bonanno, J.B., Almo, S.C., NYSGRC, New.York.Structural.Genomics.Research.Consortium.
compound source
symmetry
R_factor
R_Free 0.2017
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.51
ligand ADN, DMS, MSE enzyme
Gene RHE
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk]
  • Biological Unit Coordinates (4jks.pdb1.gz) 239 Kb
  • LPC: Ligand-Protein Contacts for 4JKS
  • CSU: Contacts of Structural Units for 4JKS
  • Structure Factors (2357 Kb)
  • Retrieve 4JKS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JKS from S2C, [Save to disk]
  • Re-refined 4jks structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JKS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JKS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JKS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jks] [4jks_A] [4jks_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4JKS
  • Community annotation for 4JKS at PDBWiki (http://pdbwiki.org)

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