4JN1 An Antidote for Dabigatran date
authors Schiele, F., Nar, H.
compound source
symmetry
R_factor
R_Free 0.1966
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.89
ligand GOL enzyme
Primary referenceA specific antidote for dabigatran: functional and structural characterization., Schiele F, van Ryn J, Canada K, Newsome C, Sepulveda E, Park J, Nar H, Litzenburger T, Blood. 2013 Mar 8. PMID:23476049
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (4jn1.pdb1.gz) 149 Kb
  • LPC: Ligand-Protein Contacts for 4JN1
  • CSU: Contacts of Structural Units for 4JN1
  • Structure Factors (844 Kb)
  • Retrieve 4JN1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JN1 from S2C, [Save to disk]
  • Re-refined 4jn1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JN1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JN1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JN1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jn1_H] [4jn1] [4jn1_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4JN1: [IG_like] [IGv ] by SMART
    • Other resources with information on 4JN1
  • Community annotation for 4JN1 at PDBWiki (http://pdbwiki.org)

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