4JOF	CFTR Associated Ligand (CAL) PDZ domain bound to peptide L-iCAL36 (ANSRLPTSII)	date
authors	Amacher, J.F., Madden, D.R.
compound		source
symmetry		R_factor R_Free 0.2009
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.20
ligand	GOL	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Stereochemical Preferences Modulate Affinity and Selectivity among Five PDZ Domains that Bind CFTR: Comparative Structural and Sequence Analyses., Amacher JF, Cushing PR, Brooks L 3rd, Boisguerin P, Madden DR, Structure. 2014 Jan 7;22(1):82-93. doi: 10.1016/j.str.2013.09.019. Epub 2013 Nov , 7. PMID:24210758

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (4jof.pdb1.gz) 32 Kb Biological Unit Coordinates (4jof.pdb2.gz) 33 Kb LPC: Ligand-Protein Contacts for 4JOF CSU: Contacts of Structural Units for 4JOF Structure Factors (380 Kb) Retrieve 4JOF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4JOF from S2C, [Save to disk] Re-refined 4jof structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4JOF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4JOF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4JOF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4jof_B] [4jof_A] [4jof_D] [4jof_C] [4jof] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4JOF: [PDZ ] by SMART

Other resources with information on 4JOF

Community annotation for 4JOF at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---