OCA Atlas for 4JPO

4JPO

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
A, B
D, C

Primary reference

Reconfiguration of the proteasome during chaperone-mediated assembly., Park S, Li X, Kim HM, Singh CR, Tian G, Hoyt MA, Lovell S, Battaile KP, Zolkiewski M, Coffino P, Roelofs J, Cheng Y, Finley D, Nature. 2013 May 23;497(7450):512-6. doi: 10.1038/nature12123. Epub 2013 May 5. PMID:23644457

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk]

Biological Unit Coordinates (4jpo.pdb1.gz) 63 Kb

Biological Unit Coordinates (4jpo.pdb2.gz) 62 Kb

Biological Unit Coordinates (4jpo.pdb3.gz) 12 Kb

Biological Unit Coordinates (4jpo.pdb4.gz) 12 Kb

Biological Unit Coordinates (4jpo.pdb5.gz) 72 Kb

Biological Unit Coordinates (4jpo.pdb6.gz) 71 Kb

Biological Unit Coordinates (4jpo.pdb7.gz) 141 Kb

Biological Unit Coordinates (4jpo.pdb8.gz) 279 Kb

CSU: Contacts of Structural Units for 4JPO

Structure Factors (352 Kb)

Retrieve 4JPO in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4JPO from S2C, [Save to disk]

Re-refined 4jpo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4JPO in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4jpo] [4jpo_A] [4jpo_B] [4jpo_C] [4jpo_D]

SWISS-PROT database:

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