4JPV Crystal structure of broadly and potently neutralizing antibody 3bnc117 in complex with hiv-1 gp120 date
authors Zhou, T., Moquin, S., Kwong, P.D.
compound source
symmetry
R_factor
R_Free 0.2593
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.83
ligand EDO, EPE, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
G


Primary referenceSomatic Mutations of the Immunoglobulin Framework Are Generally Required for Broad and Potent HIV-1 Neutralization., Klein F, Diskin R, Scheid JF, Gaebler C, Mouquet H, Georgiev IS, Pancera M, Zhou T, Incesu RB, Fu BZ, Gnanapragasam PN, Oliveira TY, Seaman MS, Kwong PD, Bjorkman PJ, Nussenzweig MC, Cell. 2013 Mar 28;153(1):126-38. doi: 10.1016/j.cell.2013.03.018. PMID:23540694
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (271 Kb) [Save to disk]
  • Biological Unit Coordinates (4jpv.pdb1.gz) 258 Kb
  • LPC: Ligand-Protein Contacts for 4JPV
  • CSU: Contacts of Structural Units for 4JPV
  • Structure Factors (404 Kb)
  • Retrieve 4JPV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JPV from S2C, [Save to disk]
  • Re-refined 4jpv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JPV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JPV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JPV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jpv] [4jpv_L] [4jpv_H] [4jpv_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4JPV: [IG_like] [IGv ] by SMART
    • Other resources with information on 4JPV
  • Community annotation for 4JPV at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science