4JPZ Voltage-gated sodium channel 1.2 C-terminal domain in complex with FGF13U and Ca2+/calmodulin date
authors Wang, C., Chung, B.C., Yan, H., Wang, H.G., Lee, S.Y., Pitt, G.S.
compound source
symmetry
R_factor
R_Free 0.2458
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.02
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, I


H, B


Primary referenceStructural analyses of Ca(2+)/CaM interaction with NaV channel C-termini reveal mechanisms of calcium-dependent regulation., Wang C, Chung BC, Yan H, Wang HG, Lee SY, Pitt GS, Nat Commun. 2014 Sep 18;5:4896. doi: 10.1038/ncomms5896. PMID:25232683
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]
  • Biological Unit Coordinates (4jpz.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (4jpz.pdb2.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 4JPZ
  • CSU: Contacts of Structural Units for 4JPZ
  • Structure Factors (228 Kb)
  • Retrieve 4JPZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JPZ from S2C, [Save to disk]
  • Re-refined 4jpz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JPZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JPZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JPZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jpz] [4jpz_E] [4jpz_B] [4jpz_H] [4jpz_C] [4jpz_A] [4jpz_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4JPZ: [EFh] [FGF] [IQ ] by SMART
    • Other resources with information on 4JPZ
  • Community annotation for 4JPZ at PDBWiki (http://pdbwiki.org)

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