4JRA CRYSTAL STRUCTURE OF THE BOTULINUM NEUROTOXIN A RECEPTOR-BINDING DOMAIN IN COMPLEX WITH THE LUMINAL DOMAIN Of SV2C date 2013-03-21
authors Benoit, R.M., Frey, D., Wieser, M.M., Jaussi, R., Schertler, G.F.X., Capitani, G., Kammerer, R.A.
compound source
symmetry
R_factor
R_Free 0.2692
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand CL, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis for recognition of synaptic vesicle protein 2C by botulinum neurotoxin A., Benoit RM, Frey D, Hilbert M, Kevenaar JT, Wieser MM, Stirnimann CU, McMillan D, Ceska T, Lebon F, Jaussi R, Steinmetz MO, Schertler GF, Hoogenraad CC, Capitani G, Kammerer RA, Nature. 2013 Nov 17. doi: 10.1038/nature12732. PMID:24240280
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (324 Kb) [Save to disk]
  • Biological Unit Coordinates (4jra.pdb1.gz) 162 Kb
  • Biological Unit Coordinates (4jra.pdb2.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 4JRA
  • CSU: Contacts of Structural Units for 4JRA
  • Structure Factors (1493 Kb)
  • Retrieve 4JRA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JRA from S2C, [Save to disk]
  • Re-refined 4jra structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JRA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JRA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JRA, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jra_C] [4jra_B] [4jra_D] [4jra_A] [4jra]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4JRA
  • Community annotation for 4JRA at PDBWiki (http://pdbwiki.org)

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