4JWR Co-crystal structure of MDM2 with inhibitor {(2S,5R,6S)-6-(3-chlorophenyl)-5-(4-chlorophenyl)-4-[(2S)-1-hydroxybutan-2-yl]-3-oxomorpholin-2-yl}acetic acid date 2013-03-27
authors Shaffer, P.L.
compound source
symmetry
R_factor
R_Free 0.2661
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.35
ligand 1MY enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceRational Design and Binding Mode Duality of MDM2-p53 Inhibitors., Gonzalez-Lopez de Turiso F, Sun D, Rew Y, Bartberger MD, Beck HP, Canon J, Chen A, Chow D, Correll TL, Huang X, Julian LD, Kayser F, Lo MC, Long AM, McMinn D, Oliner JD, Osgood T, Powers JP, Saiki AY, Schneider S, Shaffer P, Xiao SH, Yakowec P, Yan X, Ye Q, Yu D, Zhao X, Zhou J, Medina JC, Olson SH, J Med Chem. 2013 Apr 18. PMID:23597064
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (4jwr.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (4jwr.pdb2.gz) 32 Kb
  • Biological Unit Coordinates (4jwr.pdb3.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 4JWR
  • CSU: Contacts of Structural Units for 4JWR
  • Structure Factors (282 Kb)
  • Retrieve 4JWR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JWR from S2C, [Save to disk]
  • Re-refined 4jwr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JWR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JWR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JWR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jwr_B] [4jwr_A] [4jwr] [4jwr_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4JWR
  • Community annotation for 4JWR at PDBWiki (http://pdbwiki.org)

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