4JYG Crystal structure of RARbeta LBD in complex with agonist BMS411 [4-{[(5,5-dimethyl-8-phenyl-5,6-dihydronaphthalen-2-yl)carbonyl]amino}benzoic acid] date 2013-03-29
authors Nadendla, E.K., Teyssier, C., Germain, P., Delfosse, V., Bourguet, W.
compound source
symmetry
R_factor
R_Free 0.2570
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.35
ligand 1NY, FLC, PE4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (4jyg.pdb1.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 4JYG
  • CSU: Contacts of Structural Units for 4JYG
  • Structure Factors (172 Kb)
  • Retrieve 4JYG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JYG from S2C, [Save to disk]
  • Re-refined 4jyg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JYG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JYG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JYG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jyg_F] [4jyg_B] [4jyg_A] [4jyg] [4jyg_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JYG: [HOLI ] by SMART
  • Other resources with information on 4JYG
  • Community annotation for 4JYG at PDBWiki (http://pdbwiki.org)

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