4JYY Oxidoreductase date Apr 01, 2013
title Crystal Structure Of The Azide And Iron Substituted Clostriu Difficile Sod2 Complex
authors W.Li, T.L.Ying, C.L.Wang, Y.Zhao, H.F.Wang, X.S.Tan
compound source
Molecule: Superoxide Dismutase
Chain: A
Fragment: Unp Residues 27-234
Engineered: Yes
Organism_scientific: Clostridium Difficile
Organism_taxid: 272563
Strain: 630
Gene: Cd630_16310, Soda
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosseta(De3)Plys S
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmal-C2x
symmetry Space Group: P 65 2 2
R_factor 0.182 R_Free 0.198
length a length b length c angle alpha angle beta angle gamma
80.375 80.375 250.532 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand AZI, FE enzyme Oxidoreductase E.C. BRENDA
Gene CD630
  • superoxide dismutase activit...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (4jyy.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 4JYY
  • CSU: Contacts of Structural Units for 4JYY
  • Structure Factors (328 Kb)
  • Retrieve 4JYY in mmCIF format [Save to disk]
  • Re-refined 4jyy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JYY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JYY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4JYY, from MSDmotif at EBI
  • Fold representative 4jyy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jyy_A] [4jyy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4JYY
  • Community annotation for 4JYY at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science