4JZD	Structure of factor VIIA in complex with the inhibitor 2-{2-[(4-carbamimidoylphenyl)carbamoyl]-6-methoxypyridin-3-yl}-5-{[(2S)-1-hydroxy-3,3-dimethylbutan-2-yl]carbamoyl}benzoic acid	date
authors	Jacobson, B.L., Anumula, R.
compound		source
symmetry		R_factor R_Free 0.1966
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.20
ligand	1NJ, CA, GOL, SO4	enzyme
Gene Ontology	Chain Function Process Component H L
Primary reference	Discovery of nonbenzamidine factor VIIa inhibitors using a biaryl acid scaffold., Bolton SA, Sutton JC, Anumula R, Bisacchi GS, Jacobson B, Slusarchyk WA, Treuner UD, Wu SC, Zhao G, Pi Z, Sheriff S, Smirk RA, Bisaha S, Cheney DL, Wei A, Schumacher WA, Hartl KS, Liu E, Zahler R, Seiler SM, Bioorg Med Chem Lett. 2013 Jun 20. pii: S0960-894X(13)00737-3. doi:, 10.1016/j.bmcl.2013.06.028. PMID:23927973

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk] Biological Unit Coordinates (4jzd.pdb1.gz) 58 Kb LPC: Ligand-Protein Contacts for 4JZD CSU: Contacts of Structural Units for 4JZD Structure Factors (779 Kb) Retrieve 4JZD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4JZD from S2C, [Save to disk] Re-refined 4jzd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4JZD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4JZD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4JZD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4jzd] [4jzd_L] [4jzd_H] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4JZD: [EGF] [Tryp_SPc ] by SMART

Other resources with information on 4JZD

Community annotation for 4JZD at PDBWiki (http://pdbwiki.org)

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