4JZU Crystal structure of the Bacillus subtilis pyrophosphohydrolase BsRppH bound to a non-hydrolysable triphosphorylated dinucleotide RNA (pcp-pGpG) - first guanosine residue in guanosine binding pocket date 2013-04-03
authors Piton, J., Larue, V., Thillier, Y., Dorleans, A., Pellegrini, O., Sierra-Gallay, I.Li.de.la., Vasseur, J.J., Debart, F., Tisne, C., Condon, C.
compound source
symmetry
R_factor
R_Free 0.2089
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand EPE, GCP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBacillus subtilis RNA deprotection enzyme RppH recognizes guanosine in the second position of its substrates., Piton J, Larue V, Thillier Y, Dorleans A, Pellegrini O, Li de la Sierra-Gallay I, Vasseur JJ, Debart F, Tisne C, Condon C, Proc Natl Acad Sci U S A. 2013 Apr 22. PMID:23610407
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (4jzu.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (4jzu.pdb2.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 4JZU
  • CSU: Contacts of Structural Units for 4JZU
  • Structure Factors (628 Kb)
  • Retrieve 4JZU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JZU from S2C, [Save to disk]
  • Re-refined 4jzu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JZU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JZU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JZU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jzu_A] [4jzu_C] [4jzu_B] [4jzu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4JZU
  • Community annotation for 4JZU at PDBWiki (http://pdbwiki.org)

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