4K7I HUMAN PEROXIREDOXIN 5 with a fragment date 2013-04-17
authors Guichou, J.F.
compound source
symmetry
R_factor
R_Free 0.22489
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.25
ligand CAQ, DMS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceComparing Binding Modes of Analogous Fragments Using NMR in Fragment-Based Drug Design: Application to PRDX5., Aguirre C, Brink TT, Guichou JF, Cala O, Krimm I, PLoS One. 2014 Jul 15;9(7):e102300. doi: 10.1371/journal.pone.0102300., eCollection 2014. PMID:25025339
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (4k7i.pdb1.gz) 29 Kb
  • Biological Unit Coordinates (4k7i.pdb2.gz) 28 Kb
  • Biological Unit Coordinates (4k7i.pdb3.gz) 28 Kb
  • Biological Unit Coordinates (4k7i.pdb4.gz) 56 Kb
  • Biological Unit Coordinates (4k7i.pdb5.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 4K7I
  • CSU: Contacts of Structural Units for 4K7I
  • Structure Factors (421 Kb)
  • Retrieve 4K7I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4K7I from S2C, [Save to disk]
  • Re-refined 4k7i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4K7I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4K7I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4K7I, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4k7i_C] [4k7i_B] [4k7i] [4k7i_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4K7I
  • Community annotation for 4K7I at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science