4K9H Bace-1 inhibitor complex date 2013-04-19
authors Jordan, S.R.
compound source
symmetry
R_factor
R_Free 0.24831
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.29
ligand 1QU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceHydroxyethylamine-based inhibitors of BACE1: P1-P3 macrocyclization can improve potency, selectivity, and cell activity., Pennington LD, Whittington DA, Bartberger MD, Jordan SR, Monenschein H, Nguyen TT, Yang BH, Xue QM, Vounatsos F, Wahl RC, Chen K, Wood S, Citron M, Patel VF, Hitchcock SA, Zhong W, Bioorg Med Chem Lett. 2013 Aug 1;23(15):4459-64. doi: 10.1016/j.bmcl.2013.05.028., Epub 2013 May 16. PMID:23769639
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk]
  • Biological Unit Coordinates (4k9h.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (4k9h.pdb2.gz) 63 Kb
  • Biological Unit Coordinates (4k9h.pdb3.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 4K9H
  • CSU: Contacts of Structural Units for 4K9H
  • Structure Factors (1031 Kb)
  • Retrieve 4K9H in mmCIF format [Save to disk]
  • Re-refined 4k9h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4K9H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4K9H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4K9H, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4k9h_C] [4k9h] [4k9h_A] [4k9h_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4K9H
  • Community annotation for 4K9H at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science