4KDL date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceStructural Basis for Ovarian Tumor Domain-containing Protein 1 (OTU1) Binding to p97/Valosin-containing Protein (VCP)., Kim SJ, Cho J, Song EJ, Kim SJ, Kim HM, Lee KE, Suh SW, Kim EE, J Biol Chem. 2014 May 2;289(18):12264-74. doi: 10.1074/jbc.M113.523936. Epub 2014, Mar 7. PMID:24610782
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (4kdl.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (4kdl.pdb2.gz) 24 Kb
  • Biological Unit Coordinates (4kdl.pdb3.gz) 83 Kb
  • CSU: Contacts of Structural Units for 4KDL
  • Structure Factors (605 Kb)
  • Retrieve 4KDL in mmCIF format [Save to disk]
  • Re-refined 4kdl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KDL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kdl] [4kdl_A] [4kdl_B]
  • SWISS-PROT database:
  • Domains found in 4KDL: [CDC48_2] [CDC48_N ] by SMART

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