4KGC Nucleosome Core Particle Containing (ETA6-P-CYMENE)-(1, 2-ETHYLENEDIAMINE)-RUTHENIUM date
authors Adhireksan, Z., Davey, C.A.
compound source
symmetry
R_factor
R_Free 0.28234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.69
ligand HRU, MG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


Primary referenceLigand substitutions between ruthenium-cymene compounds can control protein versus DNA targeting and anticancer activity., Adhireksan Z, Davey GE, Campomanes P, Groessl M, Clavel CM, Yu H, Nazarov AA, Yeo CH, Ang WH, Droge P, Rothlisberger U, Dyson PJ, Davey CA, Nat Commun. 2014 Mar 18;5:3462. doi: 10.1038/ncomms4462. PMID:24637564
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (245 Kb) [Save to disk]
  • Biological Unit Coordinates (4kgc.pdb1.gz) 237 Kb
  • LPC: Ligand-Protein Contacts for 4KGC
  • CSU: Contacts of Structural Units for 4KGC
  • Structure Factors (844 Kb)
  • Retrieve 4KGC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KGC from S2C, [Save to disk]
  • Re-refined 4kgc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KGC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KGC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KGC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kgc_I] [4kgc_D] [4kgc_A] [4kgc_G] [4kgc_C] [4kgc_H] [4kgc_E] [4kgc] [4kgc_J] [4kgc_B] [4kgc_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4KGC: [H2A] [H2B] [H3] [H4 ] by SMART
    • Other resources with information on 4KGC
  • Community annotation for 4KGC at PDBWiki (http://pdbwiki.org)

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