4KGL Crystal structure of human alpha-L-iduronidase complex with [2R,3R,4R,5S]-2-carboxy-3,4,5-trihydroxy-piperidine date 2013-04-29
authors Bie, H., Yin, J., He, X., Kermode, A.R., Goddard-Borger, E.D., Withers, S.G., James, M.N.G.
compound source
symmetry
R_factor
R_Free 0.25415
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand BMA, GOL, IDJ, MAN, NAG, TLA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInsights into mucopolysaccharidosis I from the structure and action of alpha-L-iduronidase., Bie H, Yin J, He X, Kermode AR, Goddard-Borger ED, Withers SG, James MN, Nat Chem Biol. 2013 Sep 11. doi: 10.1038/nchembio.1357. PMID:24036510
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk]
  • Biological Unit Coordinates (4kgl.pdb1.gz) 99 Kb
  • Biological Unit Coordinates (4kgl.pdb2.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 4KGL
  • CSU: Contacts of Structural Units for 4KGL
  • Structure Factors (661 Kb)
  • Retrieve 4KGL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KGL from S2C, [Save to disk]
  • Re-refined 4kgl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KGL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KGL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KGL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kgl_B] [4kgl] [4kgl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4KGL
  • Community annotation for 4KGL at PDBWiki (http://pdbwiki.org)

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