OCA Atlas for 4KHP

4KHP

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MG, PAR, PCY

enzyme

Gene
Ontology

Chain	Function	Process	Component
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U

Primary reference

Crystal Structure of a Bioactive Pactamycin Analog Bound to the 30S Ribosomal Subunit., Tourigny DS, Fernandez IS, Kelley AC, Vakiti RR, Chattopadhyay AK, Dorich S, Hanessian S, Ramakrishnan V, J Mol Biol. 2013 May 20. pii: S0022-2836(13)00303-3. doi:, 10.1016/j.jmb.2013.05.004. PMID:23702293

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1039 Kb) [Save to disk]

Biological Unit Coordinates (4khp.pdb1.gz) 1026 Kb

LPC: Ligand-Protein Contacts for 4KHP

CSU: Contacts of Structural Units for 4KHP

Structure Factors (3866 Kb)

Retrieve 4KHP in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4KHP from S2C, [Save to disk]

Re-refined 4khp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4KHP in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4khp] [4khp_A] [4khp_B] [4khp_C] [4khp_D] [4khp_E] [4khp_F] [4khp_G] [4khp_H] [4khp_I] [4khp_J] [4khp_K] [4khp_L] [4khp_M] [4khp_N] [4khp_O] [4khp_P] [4khp_Q] [4khp_R] [4khp_S] [4khp_T] [4khp_U] [4khp_X]

SWISS-PROT database:

Domains found in 4KHP: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

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