4KIS Crystal Structure of a LSR-DNA Complex date 2013-05-02
authors Rutherford, K., Yuan, P., Perry, K., Duyne, G.D.Van.
compound source
symmetry
R_factor
R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.20
ligand CA, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceAttachment site recognition and regulation of directionality by the serine integrases., Rutherford K, Yuan P, Perry K, Sharp R, Van Duyne GD, Nucleic Acids Res. 2013 Sep 1;41(17):8341-56. doi: 10.1093/nar/gkt580. Epub 2013 , Jul 2. PMID:23821671
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (267 Kb) [Save to disk]
  • Biological Unit Coordinates (4kis.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (4kis.pdb2.gz) 68 Kb
  • Biological Unit Coordinates (4kis.pdb3.gz) 69 Kb
  • Biological Unit Coordinates (4kis.pdb4.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 4KIS
  • CSU: Contacts of Structural Units for 4KIS
  • Structure Factors (639 Kb)
  • Retrieve 4KIS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KIS from S2C, [Save to disk]
  • Re-refined 4kis structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KIS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KIS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KIS, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kis_G] [4kis_A] [4kis_C] [4kis_L] [4kis_D] [4kis_J] [4kis_K] [4kis_B] [4kis_H] [4kis_I] [4kis] [4kis_F] [4kis_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4KIS
  • Community annotation for 4KIS at PDBWiki (http://pdbwiki.org)

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