4KJM	Cell Adhesion	date	May 03, 2013
title	Crystal Structure Of The Staphylococcus Aureus Protein (Np_6 Domain 3912-4037) Similar To Streptococcal Adhesins Emb And
authors	M.Cymborowski, I.G.Shabalin, G.Joachimiak, M.Chruszcz, P.Gornick R.Zhang, A.Joachimiak, W.Minor, Midwest Center For Structural Midwest Center For Structural Genomics (Mcsg)
compound		source
Molecule: Extracellular Matrix-Binding Protein Ebh Chain: A, B Fragment: Apc298np_646141.1 Domain (Unp Residues 3912-4037) Synonym: Ecm-Binding Protein Homolog Engineered: Yes		Organism_scientific: Staphylococcus Aureus Subsp. Aureus Organism_taxid: 196620 Strain: Mw2 Gene: 1003436, Ebh Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21magic Expression_system_vector_type: Pet15b Expression_system_plasmid: Pg117
symmetry	Space Group: P 21 21 2	R_factor 0.185 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.783 59.230 88.186 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	ACT, CL, MSE, NA, ZN	enzyme
note	4KJM supersedes 1XVH
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (4kjm.pdb1.gz) 81 Kb Biological Unit Coordinates (4kjm.pdb2.gz) 159 Kb LPC: Ligand-Protein Contacts for 4KJM CSU: Contacts of Structural Units for 4KJM Structure Factors (127 Kb) Retrieve 4KJM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4KJM from S2C, [Save to disk] Re-refined 4kjm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4KJM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4KJM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4KJM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4kjm_A] [4kjm_B] [4kjm] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4KJM: [GA ] by SMART

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