4KK0 Crystal Structure of TSC1 core domain from S. pombe date 2013-05-05
authors Sun, W., Zhu, Y., Wang, Z.Z., Zhong, Q., Gao, F., Lou, J.Z., Gong, W.M., Xu, W.Q.
compound source
symmetry
R_factor
R_Free 0.25646
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand MSE enzyme
Primary referenceCrystal structure of the yeast TSC1 core domain and implications for tuberous sclerosis pathological mutations., Sun W, Zhu YJ, Wang Z, Zhong Q, Gao F, Lou J, Gong W, Xu W, Nat Commun. 2013 Jul 16;4:2135. doi: 10.1038/ncomms3135. PMID:23857276
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (657 Kb) [Save to disk]
  • Biological Unit Coordinates (4kk0.pdb1.gz) 136 Kb
  • Biological Unit Coordinates (4kk0.pdb2.gz) 134 Kb
  • Biological Unit Coordinates (4kk0.pdb3.gz) 134 Kb
  • Biological Unit Coordinates (4kk0.pdb4.gz) 134 Kb
  • Biological Unit Coordinates (4kk0.pdb5.gz) 134 Kb
  • LPC: Ligand-Protein Contacts for 4KK0
  • CSU: Contacts of Structural Units for 4KK0
  • Structure Factors (5333 Kb)
  • Retrieve 4KK0 in mmCIF format [Save to disk]
  • Re-refined 4kk0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KK0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KK0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KK0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kk0_D] [4kk0_I] [4kk0_G] [4kk0_J] [4kk0_H] [4kk0_A] [4kk0_E] [4kk0_F] [4kk0_C] [4kk0] [4kk0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4KK0
  • Community annotation for 4KK0 at PDBWiki (http://pdbwiki.org)

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