4KUM Structure of LSD1-CoREST-Tetrahydrofolate complex date
authors Luka, Z., Pakhomova, S., Loukachevitch, L.V., Calcutt, M.W., Newcomer, M.E., Wagner, C.
compound source
symmetry
R_factor
R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.05
ligand CL, FAD, GOL, THG enzyme
Gene HCG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the histone lysine specific demethylase LSD1 complexed with tetrahydrofolate., Luka Z, Pakhomova S, Loukachevitch LV, Calcutt MW, Newcomer ME, Wagner C, Protein Sci. 2014 Apr 8. doi: 10.1002/pro.2469. PMID:24715612
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (282 Kb) [Save to disk]
  • Biological Unit Coordinates (4kum.pdb1.gz) 274 Kb
  • LPC: Ligand-Protein Contacts for 4KUM
  • CSU: Contacts of Structural Units for 4KUM
  • Structure Factors (535 Kb)
  • Retrieve 4KUM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KUM from S2C, [Save to disk]
  • Re-refined 4kum structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KUM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KUM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KUM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kum] [4kum_B] [4kum_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4KUM: [SANT ] by SMART
    • Other resources with information on 4KUM
  • Community annotation for 4KUM at PDBWiki (http://pdbwiki.org)

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