4KVN Crystal structure of Fab 39.29 in complex with Influenza Hemagglutinin A/Perth/16/2009 (H3N2) date
authors Fong, R., Swem, L.R., Lupardus, P.J.
compound source
symmetry
R_factor
R_Free 0.2484
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
ligand BMA, NAG, PGE, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAn in vivo human-plasmablast enrichment technique allows rapid identification of therapeutic influenza a antibodies., Nakamura G, Chai N, Park S, Chiang N, Lin Z, Chiu H, Fong R, Yan D, Kim J, Zhang J, Lee WP, Estevez A, Coons M, Xu M, Lupardus P, Balazs M, Swem LR, Cell Host Microbe. 2013 Jul 17;14(1):93-103. doi: 10.1016/j.chom.2013.06.004. PMID:23870317
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (4kvn.pdb1.gz) 426 Kb
  • LPC: Ligand-Protein Contacts for 4KVN
  • CSU: Contacts of Structural Units for 4KVN
  • Structure Factors (362 Kb)
  • Retrieve 4KVN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KVN from S2C, [Save to disk]
  • Re-refined 4kvn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KVN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KVN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KVN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kvn_A] [4kvn_L] [4kvn] [4kvn_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4KVN: [IG_like] [IGv ] by SMART
    • Other resources with information on 4KVN
  • Community annotation for 4KVN at PDBWiki (http://pdbwiki.org)

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