4KZM	Transcription	date	May 30, 2013
title	Crystal Structure Of Tr3 Lbd S553a Mutant
authors	F.Li, Q.Zhang, A.Li, X.Tian, Q.Cai, W.Wang, Y.Wang, H.Chen, Y.Xing, Q
compound		source
Molecule: Nuclear Receptor Subfamily 4 Group A Member 1 Chain: B, A Fragment: Ligand Binding Domain, Unp Residues 351-598 Synonym: Early Response Protein Nak1, Nuclear Hormone Recep Nur77, Nur77, Orphan Nuclear Receptor Hmr, Orphan Nuclear Tr3, St-59, Testicular Receptor 3; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gfrp1, Hmr, Nak1, Nr4a1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet22b
symmetry	Space Group: P 21 21 21	R_factor 0.195 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 74.481 76.345 128.443 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	GOL	enzyme
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk] Biological Unit Coordinates (4kzm.pdb1.gz) 39 Kb Biological Unit Coordinates (4kzm.pdb2.gz) 40 Kb LPC: Ligand-Protein Contacts for 4KZM CSU: Contacts of Structural Units for 4KZM Structure Factors (413 Kb) Retrieve 4KZM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4KZM from S2C, [Save to disk] Re-refined 4kzm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4KZM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4KZM

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4KZM, from MSDmotif at EBI Fold representative 4kzm from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4kzm] [4kzm_A] [4kzm_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4KZM: [HOLI ] by SMART

Other resources with information on 4KZM

Community annotation for 4KZM at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014 Bioinformatics Unit Weizmann Institute of Science

---