4KZM Transcription date May 30, 2013
title Crystal Structure Of Tr3 Lbd S553a Mutant
authors F.Li, Q.Zhang, A.Li, X.Tian, Q.Cai, W.Wang, Y.Wang, H.Chen, Y.Xing, Q
compound source
Molecule: Nuclear Receptor Subfamily 4 Group A Member 1
Chain: B, A
Fragment: Ligand Binding Domain, Unp Residues 351-598
Synonym: Early Response Protein Nak1, Nuclear Hormone Recep Nur77, Nur77, Orphan Nuclear Receptor Hmr, Orphan Nuclear Tr3, St-59, Testicular Receptor 3;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gfrp1, Hmr, Nak1, Nr4a1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: P 21 21 21
R_factor 0.195 R_Free 0.248
length a length b length c angle alpha angle beta angle gamma
74.481 76.345 128.443 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand GOL enzyme
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (4kzm.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (4kzm.pdb2.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 4KZM
  • CSU: Contacts of Structural Units for 4KZM
  • Structure Factors (413 Kb)
  • Retrieve 4KZM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KZM from S2C, [Save to disk]
  • Re-refined 4kzm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4KZM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4KZM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4KZM, from MSDmotif at EBI
  • Fold representative 4kzm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kzm] [4kzm_A] [4kzm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4KZM: [HOLI ] by SMART
  • Other resources with information on 4KZM
  • Community annotation for 4KZM at PDBWiki (http://pdbwiki.org)

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