4KZZ Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A date 2013-05-30
authors Lomakin, I.B., Steitz, T.A.
compound source
symmetry
R_factor
R_Free 0.3592
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 7.03
Gene
Ontology
ChainFunctionProcessComponent
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Primary referenceThe initiation of mammalian protein synthesis and mRNA scanning mechanism., Lomakin IB, Steitz TA, Nature. 2013 Jul 21. doi: 10.1038/nature12355. PMID:23873042
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3396 Kb) [Save to disk]
  • Biological Unit Coordinates (4kzz.pdb1.gz) 3379 Kb
  • CSU: Contacts of Structural Units for 4KZZ
  • Structure Factors (574 Kb)
  • Retrieve 4KZZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KZZ from S2C, [Save to disk]
  • Re-refined 4kzz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KZZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KZZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KZZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kzz_U] [4kzz_E] [4kzz_c] [4kzz_N] [4kzz_i] [4kzz_L] [4kzz_A] [4kzz_D] [4kzz_W] [4kzz_B] [4kzz_b] [4kzz_Y] [4kzz] [4kzz_C] [4kzz_J] [4kzz_k] [4kzz_j] [4kzz_G] [4kzz_S] [4kzz_O] [4kzz_g] [4kzz_F] [4kzz_M] [4kzz_n] [4kzz_I] [4kzz_V] [4kzz_d] [4kzz_R] [4kzz_Z] [4kzz_P] [4kzz_Q] [4kzz_a] [4kzz_H] [4kzz_T] [4kzz_f] [4kzz_K] [4kzz_e] [4kzz_X]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4KZZ: [KH] [Ribosomal_S10] [Ribosomal_S13_N] [Ribosomal_S15] [Ribosomal_S19e] [Ribosomal_S27] [Ribosomal_S3Ae] [Ribosomal_S4] [Ribosomal_S6e] [S4] [UBQ] [WD40] [eIF1a ] by SMART
    • Other resources with information on 4KZZ
  • Community annotation for 4KZZ at PDBWiki (http://pdbwiki.org)

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