4L02	Crystal Structure of SphK1 with inhibitor	date	2013-05-30
authors	Min, X., Walker, N., Wang, Z.
compound		source
symmetry		R_factor R_Free 0.25539
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.75
ligand	1V2	enzyme
Gene Ontology	Chain Function Process Component A, C, B lipid kinase activity sphinganine kinase activity sphingosine-1-phosphate rece...
Primary reference	Structure guided design of a series of sphingosine kinase (SphK) inhibitors., Gustin DJ, Li Y, Brown ML, Min X, Schmitt MJ, Wanska M, Wang X, Connors R, Johnstone S, Cardozo M, Cheng AC, Jeffries S, Franks B, Li S, Shen S, Wong M, Wesche H, Xu G, Carlson TJ, Plant M, Morgenstern K, Rex K, Schmitt J, Coxon A, Walker N, Kayser F, Wang Z, Bioorg Med Chem Lett. 2013 Jun 20. pii: S0960-894X(13)00739-7. doi:, 10.1016/j.bmcl.2013.06.030. PMID:23845219

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk] Biological Unit Coordinates (4l02.pdb1.gz) 58 Kb Biological Unit Coordinates (4l02.pdb2.gz) 56 Kb Biological Unit Coordinates (4l02.pdb3.gz) 56 Kb LPC: Ligand-Protein Contacts for 4L02 CSU: Contacts of Structural Units for 4L02 Structure Factors (706 Kb) Retrieve 4L02 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4L02 from S2C, [Save to disk] Re-refined 4l02 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4L02 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4L02

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4L02, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4l02_B] [4l02_C] [4l02_A] [4l02] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4L02: [DAGKc ] by SMART

Other resources with information on 4L02

Community annotation for 4L02 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---