OCA Atlas for 4L5B

4L5B

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

1UX, UDP

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, A	deoxyadenosine kinase activi... deoxycytidine kinase activit... deoxyguanosine kinase activi... deoxynucleoside kinase activ...

Primary reference

Development of new deoxycytidine kinase inhibitors and noninvasive in vivo evaluation using positron emission tomography., Murphy JM, Armijo AL, Nomme J, Lee CH, Smith QA, Li Z, Campbell DO, Liao HI, Nathanson DA, Austin WR, Lee JT, Darvish R, Wei L, Wang J, Su Y, Damoiseaux R, Sadeghi S, Phelps ME, Herschman HR, Czernin J, Alexandrova AN, Jung ME, Lavie A, Radu CG, J Med Chem. 2013 Sep 12;56(17):6696-708. doi: 10.1021/jm400457y. Epub 2013 Aug, 15. PMID:23947754

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]

Biological Unit Coordinates (4l5b.pdb1.gz) 80 Kb

LPC: Ligand-Protein Contacts for 4L5B

CSU: Contacts of Structural Units for 4L5B

Structure Factors (869 Kb)

Retrieve 4L5B in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4L5B from S2C, [Save to disk]

Re-refined 4l5b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4L5B in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4l5b] [4l5b_A] [4l5b_B]

SWISS-PROT database:

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