4L8O Lyase date Jun 17, 2013
title Crystal Structure Of A Bile-Acid 7-Alpha Dehydratase (Clohyl From Clostridium Hylemonae Dsm 15053 At 2.20 A Resolution
authors Joint Center For Structural Genomics (Jcsg)
compound source
Molecule: Bile Acid 7a-Dehydratase, Baie
Chain: A
Engineered: Yes
Organism_scientific: Clostridium Hylemonae Dsm 15053
Organism_taxid: 553973
Gene: Baie, Clohylem_06634
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Pb1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Speedet
symmetry Space Group: H 3 2
R_factor 0.194 R_Free 0.225
length a length b length c angle alpha angle beta angle gamma
52.956 52.956 428.627 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand CO, EDO, NA, SO4 enzyme Lyase E.C. BRENDA

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (4l8o.pdb1.gz) 175 Kb
  • LPC: Ligand-Protein Contacts for 4L8O
  • CSU: Contacts of Structural Units for 4L8O
  • Structure Factors (959 Kb)
  • Retrieve 4L8O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4L8O from S2C, [Save to disk]
  • Re-refined 4l8o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4L8O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4L8O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4L8O, from MSDmotif at EBI
  • Fold representative 4l8o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4l8o] [4l8o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4L8O
  • Community annotation for 4L8O at PDBWiki (http://pdbwiki.org)

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