4LB5 Crystal structure of PKZ Zalpha in complex with ds(CG)6 (hexagonal form) date 2013-06-20
authors Rosa, M.De., Zacarias, S., Athanasiadis, A.
compound source
symmetry
R_factor
R_Free 0.2243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand ACT enzyme
Primary referenceStructural basis for Z-DNA binding and stabilization by the zebrafish Z-DNA dependent protein kinase PKZ., de Rosa M, Zacarias S, Athanasiadis A, Nucleic Acids Res. 2013 Aug 23. PMID:23975196
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (4lb5.pdb1.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 4LB5
  • CSU: Contacts of Structural Units for 4LB5
  • Structure Factors (140 Kb)
  • Retrieve 4LB5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LB5 from S2C, [Save to disk]
  • Re-refined 4lb5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4LB5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4LB5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LB5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lb5_C] [4lb5_A] [4lb5] [4lb5_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4LB5: [Zalpha ] by SMART
  • Other resources with information on 4LB5
  • Community annotation for 4LB5 at PDBWiki (http://pdbwiki.org)

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